The University of Southampton
Telephone:
+442380594473
Email:
apb@ecs.soton.ac.uk

Professor Adam Prugel-Bennett

Academic Staff

Research

Publications

Whiteford, Nava, Haslam, Niall, Weber, Gerald, Prugel-Bennett, Adam, Essex, Jonathan W., Roach, Peter L., Bradley, Mark and Neylon, Cameron (2005) An analysis of the feasibility of short read sequencing Nucleic Acids Research, 33, (19), e171-[6pp]. (doi:10.1093/nar/gni170).

Weber, Gerald, Haslam, Niall, Whiteford, Nava, Prugel-Bennett, Adam, Essex, Jonathan W. and Neylon, Cameron (2006) Thermal equivalence of DNA duplexes without calculation of melting temperature Nature Physics, 2, (1), pp. 55-59. (doi:10.1038/nphys189).

Whiteford, Nava E., Haslam, Niall J., Weber, Gerald, Prügel-Bennett, Adam, Essex, Jonathan W. and Neylon, Cameron (2008) Visualising the repeat structure of genomic sequences Complex Systems, 17, (4), pp. 381-398.

Haslam, Niall J., Whiteford, Nava E., Weber, Gerald, Prügel-Bennett, Adam, Essex, Jonathan W. and Neylon, Cameron (2008) Optimal probe length varies for targets with high sequence variation: implications for probe library design for resequencing highly variable genes PLoS ONE, 3, (6), e2500. (doi:10.1371/journal.pone.0002500).

Rogers, A. and Prügel-Bennett, A. (1999) Modelling the Dynamics of a Steady State Genetic Algorithm In, Banzhaf, W. and Reeves, C. (eds.) Foundations of Genetic Algorithms 5. Foundations of Genetic Algorithms - 5 Springer pp. 57-68.

Prügel-Bennett, A, (1999) On the Long String Limit Banzhaf, W. and Reeves, C. (eds.) At Foundations of Genetic Algorithms 5. , pp. 45-56.

Rogers, A. and Prügel-Bennett, A. (2000) Evolving Populations with Overlapping Generations Theoretical Population Biology, 57, (2), pp. 121-29.

Rogers, A. and Prügel-Bennett, A. (1999) Genetic Drift in Genetic Algorithm Selection Schemes IEEE Transactions on Evolutionary Computation, 3, (4), pp. 298-303.

Prügel-Bennett, A. and Shapiro, J. L. (1997) An analysis of genetic algorithms using statistical mechanics. Physica D, 104, pp. 75-114.

Prügel-Bennett, A. (1997) Modelling Evolving Populations Journal of Theoretical Biology, 185, pp. 81-95.

Rogers, A. and Prügel-Bennett, A. (2000) The Dynamics of a Genetic Algorithm on a Model Hard Optimization Problem Complex Systems, 11, (6), pp. 437-64.

Rogers, A. and Prügel-Bennett, A. (2001) A Solvable Model Of A Hard Optimisation Problem: 1st In, Kallel, L., Naudts, B. and Rogers, A. (eds.) Theoretical Aspects of Evolutionary Computing. Springer pp. 207-221. (Natural Computing).

Prügel-Bennett, Adam (2000) Finite Population Effects for Ranking and Tournament Selection Complex Systems, 12, (2), pp. 183-205.

Prügel-Bennett, A, (2001) The Mixing Rate of Different Crossover Operators Martin, W. N. and Spears, W. (eds.) At Foundations of Genetic Algorithms 6. , pp. 261-274.

Prügel-Bennett, Adam (2001) Modelling Crossover-Induced Linkage in Genetic Algorithms IEEE Transcations on Evolutionary Computation, 5, (4), pp. 376-387.

Hertz, John and Prügel-Bennett, Adam (1996) Learning short synfire chains by self-organization Network: Computatioon in Neural Systems, 7, (2), pp. 357-363.

Hertz, John and Prügel-Bennett, Adam (1996) Learning synfire chains: Turning noise into signal International Journal of Neural Systems, 7, (4), pp. 445-451.

Shapiro, Jonathan L. and Prügel-Bennett, Adam, (1997) Genetic algorithm dynamics in two-well potentials with basins and barrier Belew, R. K. and Vose, M. D. (eds.) At Foundations of Genetic Algorithms - 4. , pp. 101-116.

Foster, Jeff P., Prugel-Bennett, Adam and Nixon, Mark S. (2001) New Area Measures for Automatic Gait Recognition At BMVA Workshop Understanding Visual Behaviour.

Foster, J.P., Nixon, M.S. and Prugel-Bennett, A., (2001) New Area Based Measures for Gait Recognition Bigun, Josef and Smeraldi, Fabrizio (eds.) At Audio- and Video-Based Biometric Person Authentication. , pp. 312-7.

Glass, Celia A. and Prügel-Bennett, Adam (2005) A Polynomially Searchable Exponential Neighbourhood for Graph Colouring Journal of the Operational Research Society, 56, (3), pp. 324-330.

Glass, Celia A. and Prügel-Bennett, Adam (2003) Genetic Algorithm for Graph Colouring: Exploration of Galinier and Hao's algorithm Journal of Combinatorial Optimization, 7, pp. 229-236.

Prügel-Bennett, A. (2001) Authored Appendix to Cumulant Dynamics of a Population under Multiplicative Selection, Mutation, and Drift by M. Rattray and J. L. Shapiro Theoretical Population Biology, 60, (1), pp. 28-32.

Jewell, Michael O, Nixon, Mark and Prugel-Bennett, Adam, (2003) CBS: A Concept-Based Sequencer for Soundtrack Composition Ng, Kia, Busch, Christoph and Nesi, Paolo (eds.) At 3rd International Conference on Web Delivering of Music. , pp. 105-108.

Foster, Jeff, Nixon, Mark S and Prugel-Bennett, Adam (2002) Gait Recognition by Moment Based Descriptors At 4th International Conference on Recent Advances in Soft Computing, United Kingdom. , pp. 78-84.

Foster, Jeff P., Nixon, Mark S. and Prugel-Bennett, Adam P., (2001) Recognising Movement and Gait by Masking Functions Bigun, Josef (ed.) At Audio-Visual Biometric Person Authentication, Sweden.

Foster, Jeff P., Nixon, Mark S. and Prudel-Bennett, Adam (2001) New Area Based Metrics for Automatic Gait Recognition At British Machine Vision Conference. , pp. 233-242.

Foster, Jeff P., Nixon, Mark S. and Prugel-Bennett, Adam (2003) Automatic gait recognition using area-based metrics Pattern Recognition Letters, 24, pp. 2489-2497.

Ng, YHP, Carmo, BS, Prugel-Bennett, A and Yang, GZ, (2003) A First-Order Lagrangian-based variational approach for 3D flow vector field restoration Lemke, HU, Vannier, MW, Inamura, K, Farman, AG, Doi, K and Reiber, JHC (eds.) At CARS 2003: COMPUTER ASSISTED RADIOLOGY AND SURGERY. 25 - 28 Jun 2003. , pp. 1185-1190.

Prügel-Bennett, A. (2004) Symmetry Breaking in Population-Based Optimization IEEE Transactions on Evolutionary Computation, 8, (1), pp. 63-79.

Prügel-Bennett, A. (2004) When A Genetic Algorithm Outperforms Hill-Climbing Theoretical Computer Science, 320, (1), pp. 135-153.

Won, K.-J., Prugel-Bennett, A. and Krogh, A. (2004) Training HMM Structure with Genetic Algorithm for Biological Sequence Analysis Bioinformatics, 20, pp. 3613-3619.

He, M., Jennings, N. R. and Prugel-Bennett, A. (2004) An adaptive bidding agent for multiple English auctions: a neuro-fuzzy approach At IEEE Conference on Fuzzy Systems, Hungary. , pp. 1519-1524.

Won, Kyoung-Jae, Prugel-Bennett, Adam and Krogh, Anders, Mircea Gh, Mircea Gh, Howlett, Robert J. and Jain, Lakhmi C.(eds.) (2004) The Block Hidden Markov Model for Biological Sequence Analysis Lecture Notes in Computer Science, 3213, pp. 64-70.

Jewell, Michael O., Middleton, Lee, Nixon, Mark S., Prügel-Bennett, Adam and Wong, Sylvia C., (2005) A Distributed Approach to Musical Composition Khosla, Rajiv, Howlett, Robert J. and Jain, Lakhmi C. (eds.) At 9th International Conference on Knowledge-Based Intelligent Information and Engineering Systems (KES), Australia. 14 - 16 Sep 2005. , pp. 642-648.

Carmo, Bernardo Silva, Ng, Y H Pauline, Prügel-Bennett, Adam and Yang, Guang-Zhong, Barillot, C, Haynor, D R and Hellier, P(eds.) (2004) A Data Clustering and Streamline Reduction Method for 3D MR Flow Vector Field Simplification Lecture Notes in Computer Science, 3216, pp. 451-458.

Jewell, Michael O., Nixon, Mark S. and Prugel-Bennett, Adam (2005) State-Based Sequencing: Directing The Evolution of Music At International Computer Music Conference. 05 - 09 Sep 2005.

Jewell, Michael O., Lawrence, K. Faith, Tuffield, Mischa M., Prugel-Bennett, Adam, Millard, David E., Nixon, Mark S., schraefel, m.c. and Shadbolt, Nigel R. (2005) OntoMedia: An Ontology for the Representation of Heterogeneous Media At Multimedia Information Retrieval Workshop (MMIR 2005) SIGIR, Brazil.

Lawrence, K. Faith, Tuffield, Mischa M., Jewell, Mike O., Prugel-Bennett, Adam, Millard, David E., Nixon, Mark S., schraefel, m. c. and Shadbolt, Nigel R. (2005) OntoMedia - Creating an Ontology for Marking Up the Contents of Heterogeneous Media At Ontology Patterns for the Semantic Web ISWC-05 Workshop.

Won, Kyoung Jae, Hamelryck, Thomas, Prugel-Bennett, Adam and Krogh, Anders (2005) Evolving Hidden Markov Models for Protein Secondary Structure Prediction At IEEE Congress on Evolutionary Computation. 02 - 05 Sep 2005. , pp. 33-40.

Whiteford, Nava, Haslam, Niall, Weber, Gerald, Prügel-Bennett, Adam, Essex, Jonathan W., Roach, Peter L., Bradley, Mark and Neylon, Cameron (2005) An analysis of the feasibility of short read sequencing Nucleic Acids Research, 33, (19), e171.

Zhou, Z., Prugel-Bennett, A. and Damper, R. I. (2006) A Bayesian framework for extracting human gait using strong prior knowledge IEEE Transactions on Pattern Analysis and Machine Intelligence, 28, (11), pp. 1738-1752.

Rogers, Alex, Prügel-Bennett, Adam and Jennings, N. R. (2006) Phase Transitions and Symmetry Breaking in Genetic Algorithms with Crossover Theoretical Computer Science, 358, (1), pp. 121-141.

Lawrence, K. Faith, Jewell, Michael O, schraefel, m. c. and Prugel-Bennett, Adam (2006) Annotation of Heterogenous Media Using OntoMedia At First International Workshop on Semantic Web Annotations for Multimedia (SWAMM).

Zhou, Z, Damper, R I and Prugel-Bennett, A (2006) Model selection within a Bayesian approach to extraction of walker motion At IEEE Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06). , pp. 44-51.

Weber, Gerald, Haslam, Niall, Whiteford, Nava, Prügel-Bennett, Adam, Essex, Jonathan and Neylon, Cameron (2006) Thermal equivalence of DNA duplexes without calculation of melting temperature Nature Physics, 2, pp. 55-59.

Prügel-Bennett, A. and Rogers, A. (2001) Modelling GA Dynamics: 1st In, Kallel, L., Naudts, B. and Rogers, A. (eds.) Theoretical Aspects of Evolutionary Computing. Springer pp. 59-86. (Natural Computing).

Won, Kyoung-Jae, Prügel-Bennett, Adam and Krogh, Anders (2006) Evolving the Structure of Hidden Markov Models IEEE Transactions on Evolutionary Computation, 10, (1), pp. 39-49.

He, M, Jennings, N. R. and Prugel-Bennett, A (2006) A Heuristic Bidding Strategy for Buying Multiple Goods in Multiple English Auctions. ACM Trans on Internet Technology, 6, (4), pp. 465-496.

Pakka, Vijayanarasimha, Prugel-Bennett, Adam and Dasmahapatra, Srinandan (2009) CORRELATED FLUCTUATIONS PROBE DYNAMICS OF TRANSCRIPTIONAL REGULATION At Sixth International Workshop on Computational Systems Biology, WCSB 2009, Denmark. 10 - 12 Jun 2009.

Qasem, Mohamed and Prugel-Bennett, Adam (2009) Learning the large-scale structure of the max-sat landscape using populations IEEE Transactions on Evolutionary Computation, 14, (4), pp. 518-529. (doi:10.1109/TEVC.2009.2033579).

Qasem, Mohamed and Prugel-Bennett, Adam (2009) Improving Performance in Combinatorial Optimisation Using Averaging and Clustering At EvoCOP'09.

Qasem, Mohamed and Prugel-Bennett, Adam (2008) Complexity of Max-SAT using stochastic algorithms At Proceedings of the 10th annual conference on Genetic and evolutionary computation, Georgia.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) A Scalable, Accurate Hybrid Recommender System At The 3rd International Conference on Knowledge Discovery and Data Mining (WKDD 2010), Thailand. 09 - 10 Jan 2010.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) An Improved Switching Hybrid Recommender System Using Naive Bayes Classi?er and Collaborative Filtering At The 2010 IAENG International Conference on Data Mining and Applications. 17 - 19 Mar 2010.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) Novel Heuristics for Coalition Structure Generation in Multi-Agent Systems At The 2010 International Conference of Computational Intelligence and Intelligent Systems, United Kingdom. 30 Jun - 02 Jul 2010.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) Novel Significance Weighting Schemes for Collaborative Filtering: Generating Improved Recommendations in Sparse Environments At DMIN'10, the 2010 International Conference on Data Mining!, United States.

Prugel-Bennett, A. (2010) Benefits of a population: five mechanisms that advantage population-based algorithms IEEE Transactions on Evolutionary Computation, 14, (4), pp. 500-517. (doi:10.1109/TEVC.2009.2039139).

Whiteford, N., Haslam, N., Weber, G., Prugel-Bennett, A., Essex, J.~W. and Neylon, C. (2008) Visualising the repeat structure of genomic sequences Complex Systems, 17, (4), pp. 381-398.

Pakka, Vijayanarasimha, Prugel-Bennett, Adam and Dasmahapatra, Srinandan (2010) Correlated fluctuations carry signatures of gene regulatory network dynamics Journal of Theoretical Biology, 266, (3), pp. 343-357. (doi:10.1016/j.jtbi.2010.06.039). (PMID:20619272).

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) Building Switching Hybrid Recommender System Using Machine Learning Classifiers and Collaborative Filtering IAENG International Journal of Computer Science, 37, (3)

Barnard, Thomas and Prügel-Bennett, Adam (2011) Experiments in Bayesian Recommendation In Proceedings of the 7th Atlantic Web Intelligence Conference, AWIC 2011, Fribourg, Switzerland, January 26-28, 2011. Springer..

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2011) "Fulfilling the Needs of Gray-Sheep Users in Recommender Systems, A Clustering Solution" At 2011 International Conference on Information Systems and Computational Intelligence, China. 18 - 20 Jan 2011.

Barnard, Thomas and Prugel-Bennett, Adam (2011) Privacy-Preserving Profiling At DMIN2011, United States. 18 - 21 Jul 2011.

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2010) A Novel Magnetic Update Operator for Quantum Evolutionary Algorithms At Advanced in Soft Computing, Springer-Verlag Berlin Heidelberg 2009.

Prugel-Bennett, A. and Tayarani-Najaran, M.-H. (2011) Maximum satisfiability: anatomy of the fitness landscape for a hard combinatorial optimisation problem IEEE Transactions on Evolutionary Computation, 16, (3), pp. 319-338. (doi:10.1109/TEVC.2011.2163638).

Ghazanfar, Mustansar, Prugel-Bennett, Adam and Szedmak, Sandor (2012) Kernel mapping recommender system algorithms Information Sciences, 208, pp. 81-104. (doi:10.1016/j.ins.2012.04.012).

Ghazanfar, Mustansar, Szedmak, Sandor and Prugel-Bennett, Adam (2011) Incremental Kernel Mapping Algorithms for Scalable Recommender Systems At IEEE International Conference on Tools with Artificial Intelligence (ICTAI), Special Session on Recommender Systems in e-Commerce (RSEC), United States. 07 - 09 Nov 2011.

Syarif, Iwan, Prugel-Bennett, Adam and Wills, Gary B. (2012) Unsupervised clustering approach for network anomaly detection At Fourth International Conference on Networked Digital Technologies (NDT 2012), United Arab Emirates. 24 - 26 Apr 2012. 11 pp.

Syarif, Iwan, Zaluska, Ed, Prugel-Bennett, Adam and Wills, Gary (2012) Application of bagging, boosting and stacking to intrusion detection At MLDM 2012: 8th International Conference on Machine Learning and Data Mining, Germany. 13 - 20 Jul 2012. 10 pp.

Syarif, Iwan, Prugel-Bennett, Adam and Wills, Gary (2012) Data mining approaches for network intrusion detection: from dimensionality reduction to misuse and anomaly detection Journal of Information Technology Review, 3, (2), pp. 70-83.

Bian, Wenming, French, M. and Prugel-Bennett, Adam (2013) Stability for network flow control against disturbances and time delays SIAM Journal on Control and Optimization, 51, (2), pp. 1063-1098. (doi:10.1137/090750135).

Mehra, Chetan, Prugel-Bennett, Adam, Gerding, Enrico and Robu, Valentin (2014) Constructing smart portfolios from data driven quantitative investment models At Computational Intelligence for Financial Engineering and Economics (CIFEr), London, GB, 27 - 28 Mar 2014. IEEE, 1-8.. , pp. 1-8.

Nguyen, An, Prugel-Bennett, Adam and Dasmahapatra, Srinandan (2015) A low dimensional approximation for competence in Bacillus subtilis IEEE/ACM Transactions on Computational Biology and Bioinformatics, pp. 1-12.

Zahra, Sobia, Ghazanfar, Mustansar Ali, Khalid, Asra, Azam, Muhammad Awais, Naeem, Usman and Prugel-Bennett, Adam (2015) Novel centroid selection approaches for KMeans-clustering based recommender systems Information Sciences, pp. 1-33. (doi:10.1016/j.ins.2015.03.062).

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2013) On the landscape of combinatorial optimization problems IEEE Transactions on Evolutionary Computation, 18, (3), pp. 420-434. (doi:10.1109/TEVC.2013.2281502).

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