Klaus-Peter Zauner: Publications

Artmann, S

Artmann, S., Tsuda, S. and Zauner, K. P. (2008) Information-Theoretic Aspects of Control in a Bio-Hybrid Robot Device. In: Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems, pp. 33-40, MIT Press. ISBN 978-0-262-75017-2

Centler, F

Centler, F., Dittrich, P., Ku, L., Matsumaru, N., Pfaffmann, J. and Zauner, K. P. (2003) Artificial Life as an Aid to Astrobiology: Testing Life Seeking Techniques. In: Advances in Artificial Life---Proceedings of the 7th European Conference on Artificial Life (ECAL), pp. 31-40, Springer, Berlin.

Conrad,

Conrad, M. and Zauner, K. P. (1995) Molecular computing: steps towards integration. Oyo Buturi (Journal of The Japan Society of Applied Physics ), 64 ( 10). 1002- 1006.

Conrad, M

Conrad, M. and Zauner, K. P. (2003) Conformation-based computing: a rational and a recipe. In: Molecular Computing, pp. 1-31, MIT Press, Cambridge, MA.

Conrad, M. and Zauner, K. P. (2000) Molecular Computing with Artificial Neurons. Communications of the Korea Information Science Society, 18 (8). pp. 78-89.

Conrad, M. and Zauner, K. P. (1999) Design for a DNA conformational processor. In: DNA Based Computers III, pp. 281-287, American Mathematical Society. ISBN 0-8218-0842-7

Conrad, M. and Zauner, K. P. (1998) Conformation-driven computing: a comparison of designs based on DNA, RNA, and protein. Supramolecular Science, 5 . pp. 787-790.

Conrad, M. and Zauner, K. P. (1998) DNA as a vehicle for the self-assembly model of computing. BioSystems, 45 (1). pp. 59-66.

Conrad, M. and Zauner, K. P. (1998) Biomolecular processing of optical signals part I: general principles. In: Optical Information Science & Technology '97, August 27-30, Moscow. pp. 414-424.

Conrad, M. and Zauner, K. P. (1996) Molecular Computing: from conformational pattern recognition to complex processing networks. In: Bioinformatics, pp. 1-10, Springer-Verlag, Berlin.

Conrad, M. and Zauner, K. P. (1995) Biomaterials for intelligent systems. In: The Handbook of Brain Theory and Neural Networks, pp. 159-162, MIT Press, Cambridge, MA.

Corsi, J

Corsi, J. C., King, P. H., Morgan, H., de Planque, M. R. R. and Zauner, K. P. (2011) Belousov-Zhabotinsky oscillations inside lipid-enclosed droplets. In: BioChemIT - 1st COBRA Workshop on Biological and Chemical Information Technologies, 8 August 2011, Paris, France.

Dasmahapatra, S

Dasmahapatra, S., Werner, J. and Zauner, K. P. (2006) Noise as a Computational Resource. International Journal of Unconventional Computing, Volume (4). pp. 305-319.

Elliott,

Elliott, T., Kuang, X. T., Shadbolt, N. R. and Zauner, K. P. (2009) Adaptation in multisensory neurons: Impact on cross-modal enhancement. NETWORK-COMPUTATION IN NEURAL SYSTEMS, 20 . pp. 1-31.

Elliott, T

Elliott, T., Kuang, X., Shadbolt, N. and Zauner, K. P. (2008) An Invariance Principle for Maintaining the Operating Point of a Neuron. Network: Computation in Neural Systems, 19 (3). pp. 213-235.

Elliott, T., Kuang, X., Shadbolt, N. and Zauner, K. P. (2008) On Natural Statistics in Multisensory Integration. In: Computational and Systems Neuroscience 2008, Feb 28- Mar 2, 2008, Salt Lake City, Utah .

English, S

English, S., Gough, J., Johnson, A., Spanton, R., Sun, J., Crowder, R. and Zauner, K. P. (2008) Strategies for Maintaining Large Robot Communities. In: Artificial Life XI, 5-8 August, 2008, Winchester. p. 763.

Gough, J

Gough, J., Jones, G., Lovell, C., Macey, P., Morgan, H., Revilla, F., Spanton, R., Tsuda, S. and Zauner, K. P. (2009) Integration of Cellular Biological Structures Into Robotic Systems. Acta Futura, 3 . pp. 43-49.

Groth, P

Groth, P., Miles, S., Fang, W., Wong, S. C., Zauner, K. P. and Moreau, L. (2005) Recording and Using Provenance in a Protein Compressibility Experiment. In: The 14th IEEE International Symposium on High Performance Distributed Computing (HPDC-14), 24-27 July, 2005, Research Triangle Park, North Carolina.

Jones, G

Jones, G., Lovell, C., Morgan, H. and Zauner, K. P. (2011) Organising Chemical Reaction Networks in Space and Time with Microfluidics. International Journal of Nanotechnology and Molecular Computation (IJNMC), 3 (1). pp. 35-56. ISSN 1941-6318

King, P

King, P., Corsi, J. C., Pan, B. H., Morgan, H., de Planque, M. R. R. and Zauner, K. P. (2012) Towards molecular computing: co-development of microfluidic devices and chemical reaction media. BioSystems . (In Press)

King, P. H., Corsi, J. C., Morgan, H., de Planque, M. R. R. and Zauner, K. P. (2011) Towards on-chip on-demand microfluidic production and manipulation of droplets for chemical computing. In: BioChemIT - 1st COBRA Workshop on Biological and Chemical Information Technologies, 8 August 2011, Paris, France.

King, P. H., Corsi, J. C., Morgan, H., de Planque, M. R. R. and Zauner, K. P. (2011) Microlitre droplet-in-oil arrays via rapid direct manufacture. In: NanoBioTech 2011, 14th - 16th November, Montreux, Switzerland.

Lovell, C

Lovell, C., Jones, G., Gunn, S. and Zauner, K. P. (2011) Autonomous Experimentation: Active Learning for Enzyme Response Characterisation. JMLR: Workshop and Conference Proceedings, 16 . pp. 141-155.

Lovell, C., Zauner, K. P. and Gunn, S. (2011) Exploration and Exploitation in an Artificial Experimenter. In: ICML Workshop on On-line Trading of Exploration and Exploitation 2.

Lovell, C., Jones, G., Gunn, S. and Zauner, K. P. (2010) Autonomous Experimentation: Coupling Active Learning with Computer Controlled Microfluidics (abstract). In: Active Learning and Experimental Design Workshop, 16 May 2010, Sardinia, Italy.

Lovell, C., Jones, G., Gunn, S. and Zauner, K. P. (2010) Characterising Enzymes for Information Processing: Towards an Artificial Experimenter. In: 9th International Conference on Unconventional Computation, pp. 81-92, Springer Berlin / Heidelberg. ISBN 978-3-642-13522-4

Lovell, C., Jones, G., Gunn, S. and Zauner, K. P. (2010) An Artificial Experimenter for Enzymatic Response Characterisation. In: 13th International Conference on Discovery Science, pp. 42-56, Springer-Verlag. ISBN ISBN: 978-3-642-16183-4 (In Press)

Lovell, C. J. and Zauner, K. P. (2009) Towards Algorithms for Autonomous Experimentation. In: Eighth International Conference on Information Processing in Cells and Tissues (IPCAT 2009), 5-9 April 2009, Ascona, Switzerland. pp. 150-152.

Lovell, C. J., Jones, G. and Zauner, K. P. (2009) Autonomous Experimentation: Coupling Machine Learning with
Computer Controlled Microfluidics. In: ELRIG Drug Discovery, 7-8th September 2009, Liverpool.

Matsumaru, N

Matsumaru, N., Centler, F., Zauner, K. P. and Dittrich, P. (2004) Autonomous Experimentation for Systems Biology. In: BioPerspectives, 4th to 6th of May 2004, Wiesbaden, Germany.

Matsumaru, N., Centler, F., Zauner, K. P. and Dittrich, P. (2004) Self-adaptive Scouting---Autonomous Experimentation for Systems Biology. In: Lecture Notes in Artificial Intelligence, Vol. 3005, Lecture Notes in Computer Science pp. 52-62, Springer, Berlin.

Matsumaru, N., Centler, F., Zauner, K. P. and Dittrich, P. (2004) Towards applied systems biology: application centered models from autonomous experimentation. In: 5th International Conference on Systems Biology (ICSB), October 9-13, 2004, Heidelberg. p. 390.

Matsumaru, N., Ziagos, S., Centler, F., Zauner, K. P., Wolfl, S. and Dittrich, P. (2003) Autonomous Exploration of Dynamic Biological Systems by Scouting. In: German Conference on Bioinformatics, October 12-14, 2003, Neuherberg/Garching. p. 210.

Matsumaru, N., Colombano, S. and Zauner, K. P. (2002) Scouting Enzyme Behavior. In: Proceedings of the 2002 World Congress on Computational Intelligence, May 12-17 Honolulu, Hawaii, CEC19-24, IEEE, Piscataway, NJ. ISBN 0-7803-7278-6

Miles, S

Miles, S., Wong, S. C., Feng, W., Groth, P., Zauner, K. P. and Moreau, L. (2007) Provenance-based validation of e-science experiments. Journal of Web Semantics, 5 (1). pp. 28-38.

Muggleton, S

Muggleton, S. and Zauner, K. P. (2006) Artifical Scientists.

Pfaffmann, J

Pfaffmann, J. O. and Zauner, K. P. (2001) Scouting Context-sensitive Components. In: The Third NASA/DoD Workshop on Evolvable Hardware---EH-2001, pp. 14-20, IEEE Computer Society, Los Alamitos.

Ramlan , E

Ramlan , E. I. and Zauner, K. P. (2011) Design of interacting multi-stable nucleic acids for molecular information processing. BioSystems, 105 . pp. 14-24.

Ramlan, E

Ramlan, E. I. and Zauner, K. P. (2009) Nucleic acid enzymes: The fusion of self-assembly and conformational computing. International Journal of Unconventional Computing, 5 (2). pp. 165-189.

Ramlan, E. I. and Zauner, K. P. (2008) An Extended Dot-Bracket-Notation for Functional Nucleic Acids. In: International Workshop on Computing with Biomolecules, Wien, Austria, August 27, 2008, pp. 75-86, Oesterreichische Computer Gesellschaft. ISBN 978-3-85403-244-1

Sun,

Sun, T., Tsuda, S., Zauner, K. P. and Morgan, H. (2010) On-chip electrical impedance tomography for imaging biological cells. Biosensors & Bioelectronics, 25 . -.

Sun, T

Sun, T., Tsuda, S., Zauner, K. P. and Morgan, H. (2009) Electrical impedance imaging of biological cells in culture. In: DIELECTRICS 2009: MEASUREMENT ANALYSIS AND APPLICATIONS, 40TH ANNIVERSARY MEETING, 15–17 April 2009, University of Reading, UK.

Sun, T., Tsuda, S., Zauner, K. P. and Morgan, H. (2009) On-chip electrical impedance tomography for imaging biological cells. Biosensors and Bioelectronics . ISSN DOI:10.1016/j.bios.2009.09.036

Sun, T., Tsuda, S., Zauner, K. P. and Morgan, H. (2009) Single cell imaging using electrical impedance tomography. In: 4th IEEE international conference of Nano/Micro Engineered and Molecular Systems, 5th- 8th, January, Shenzhen, China.

Sun, T., Tsuda, S., Green, N. G., Zauner, K. P. and Morgan, H. (2008) ON-CHIP ELECTRICAL IMPEDANCE TOMOGRAPHY FOR MONITORING THE KINETICS IN THE CELL CULTURE. In: The 12th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2008), 12-16th October, 2008, San Diego Sheraton Hotel & Marina, San Diego, California, USA.

Sun, T., Tsuda, S., Zauner, K. P. and Morgan, H. (2008) On-chip electrical impedance tomography for 2D imaging of cells. In: 12th annual European conference on micro & nanoscale technologies for biosciences, 16th -19th, November, 2008, Montreux, Switzerland.

Szymanski, J

Szymanski, J., Gorecka, J. N., Igarashi, Y., Gizynski, K., Gorecki, J., Zauner, K. P. and de Planque, M. R. R. (2011) Droplets with information processing ability. International Journal of Unconventional Computing, 7 (3). pp. 185-200.

Tan, G

Tan, G. J. S., Revilla, F. D. and Zauner, K. P. (2007) Protein folding and the robustness of cells. BioSystems, 87 . pp. 289-298.

Tsuda, S

Tsuda, S., Artmann, S. and Zauner, K. P. (2009) The Phi-Bot: A Robot Controlled by a Slime Mould. In: Artificial Life Models in Hardware, pp. 213-232, Springer-Verlag London. ISBN 978-1-84882-529-1

Tsuda, S., Zauner, K. P. and Gunji, Y. P. (2007) Real-time Requirements and Restricted Resources: The Role of the Computing Substrate in Robots. In: International Conference on Morphological Computation, March 26–28, European Center of Living Technology (ECLT), Venice Italy. pp. 33-35.

Tsuda, S., Zauner, K. P. and Gunji, Y. P. (2007) Robot control with biological cells. BioSystems, 87 . pp. 215-223.

Tsuda, S., Zauner, K. P. and Gunji, Y. P. (2006) Computing Substrates and Life. In: Explorations in the Complexity of Possible Life, pp. 39-49, IOS Press. ISBN 1-58603-644-0

Tsuda, S., Zauner, K. P. and Gunji, Y. P. (2006) Robot Control: From Silicon Circuitry to Cells. In: Biologically Inspired Approaches to Advanced Information Technology, Second International Workshop, BioADIT 2006, Osaka, Japan, January 26-27, 2006, Proceedings, pp. 20-32, Springer. ISBN 3-540-31253-6

Zauner, K

Zauner, K. P. (2008) Bio-chemistry based IT: Prerequisite for a Revolution. In: ICT Event, 25.-27. November 2008, Lyon.

Zauner, K. P., Brunak, S., Phillips, A., Shapiro, E. and Muggleton, S. (2006) Molecular Machines.

Zauner, K. P. and Shapiro, E. (2006) Postscript: Buidling Blocks for a Computing Revolution.

Zauner, K. P. (2005) Information Science Meets the Material World. In: Towards 2020 Science, 30 June - 2 July 2005, Venice.

Zauner, K. P. (2005) From Prescriptive Programming of Solid-state Devices to Orchestrated Self-organisation of Informed Matter. In: Unconventional Programming Paradigms: International Workshop UPP 2004, Le Mont Saint Michel, France, September 15-17, 2004, Revised Selected and Invited Papers, LNCS, 3566 pp. 47-55, Springer, Berlin. ISBN 0302-9743

Zauner, K. P. (2005) Molecular Information Technology. Critical Reviews in Solid State and Material Sciences, 30 (1). pp. 33-69.

Zauner, K. P. and Conrad, M. (2001) Enzymatic Computing. Biotechnology Progress, 17 (3). pp. 553-559.

Zauner, K. P. and Conrad, M. (2001) Molecular Approach to Informal Computing. Soft Computing, 5 . pp. 39-44.

Zauner, K. P. and Conrad, M. (2000) Enzymatic pattern processing. Naturwissenschaften, 87 (8). pp. 360-362.

Zauner, K. P. (1998) Biomolekulare Rechner. Telepolis, Aug 19 .

Zauner, K. P. and Conrad, M. (1998) Conformation-driven computing: simulating the context-conformation-action loop. Supramolecular Science, 5 . pp. 791-794.

Zauner, K. P. and Conrad, M. (1998) Biomolecular processing of optical signals part II: simulation tool for analysis and design. In: Optical Information Science & Technology '97, August 27-30, Moscow. pp. 425-433.

Zauner, K. P. and Conrad, M. (1997) Conformation-driven molecular computing: the optical connection. Optical Memory and Neural Networks, 6 (3). pp. 157-173.

Zauner, K. P. and Conrad, M. (1997) The Context-Conformation-Action Loop Simulated. In: 7th International Symposium on Molecular Electronics and Biocomputing, November 10-12, Nanjing. pp. 122-123.

Zauner, K. P. and Conrad, M. (1996) Parallel computing with DNA: towards the anti-universal machine. In: Parallel Problem Solving from Nature---PPSN IV, pp. 696-705, Springer-Verlag, Berlin.

Zauner, K. P. and Conrad, M. (1996) Simulating the interplay of structure, kinetics, and dynamics in complex biochemical networks. In: Computer Science and Biology GCB'96, September 30 to October 2, Leipzig. pp. 336-338.

Zauner, K. P. (1995) Simulation system for studying spatially structured biochemical interactions. In: The 5th International Symposium on Bioelectronic and Molecular Electronic Devices and The 6th International Conference on Molecular Electronics and Biocomputing (BMED'95 & MEBC'95), November 28.-30., Okinawa. pp. 90-91.

Zauner, K. P. (1992) Vorbild Natur--- Biologische Viren unter dem informationstheoretischen Mikroskop. c't---Magazin fuer Computer Technik (11). 236- 241.

Zauner, K. P. (1985) Kopieren des MZ-700-Basic-Interpreters. mc - Die Mikrocomputer-Zeitschrift (5). p. 80.