The University of Southampton
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+442380594473
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apb@ecs.soton.ac.uk

Professor Adam Prugel-Bennett

Academic Staff

Research

Publications

Whiteford, Nava, Haslam, Niall, Weber, Gerald, Prugel-Bennett, Adam, Essex, Jonathan W., Roach, Peter L., Bradley, Mark and Neylon, Cameron (2005) An analysis of the feasibility of short read sequencing. Nucleic Acids Research, 33 (19), e171-[6pp].

Weber, Gerald, Haslam, Niall, Whiteford, Nava, Prugel-Bennett, Adam, Essex, Jonathan W. and Neylon, Cameron (2006) Thermal equivalence of DNA duplexes without calculation of melting temperature. Nature Physics, 2 (1), 55-59.

Whiteford, Nava E., Haslam, Niall J., Weber, Gerald, Prügel-Bennett, Adam, Essex, Jonathan W. and Neylon, Cameron (2008) Visualising the repeat structure of genomic sequences. Complex Systems, 17 (4), 381-398.

Haslam, Niall J., Whiteford, Nava E., Weber, Gerald, Prügel-Bennett, Adam, Essex, Jonathan W. and Neylon, Cameron (2008) Optimal probe length varies for targets with high sequence variation: implications for probe library design for resequencing highly variable genes. PLoS ONE, 3 (6), e2500.

Rogers, A. and Prügel-Bennett, A. (1999) Modelling the Dynamics of a Steady State Genetic Algorithm. In, Banzhaf, W. and Reeves, C. (eds.) Foundations of Genetic Algorithms 5. Foundations of Genetic Algorithms - 5 Springer, pp. 57-68. ,

Prügel-Bennett, A (1999) On the Long String Limit. Banzhaf, W. and Reeves, C. (eds.) At Foundations of Genetic Algorithms 5 Foundations of Genetic Algorithms 5. pp. 45-56.

Rogers, A. and Prügel-Bennett, A. (2000) Evolving Populations with Overlapping Generations. Theoretical Population Biology, 57 (2), 121-29.

Rogers, A. and Prügel-Bennett, A. (1999) Genetic Drift in Genetic Algorithm Selection Schemes. IEEE Transactions on Evolutionary Computation, 3 (4), 298-303.

Prügel-Bennett, A. and Shapiro, J. L. (1997) An analysis of genetic algorithms using statistical mechanics. Physica D: Nonlinear Phenomena, 104, 75-114.

Prügel-Bennett, A. (1997) Modelling Evolving Populations. Journal of Theoretical Biology, 185, 81-95.

Rogers, A. and Prügel-Bennett, A. (2000) The Dynamics of a Genetic Algorithm on a Model Hard Optimization Problem. Complex Systems, 11 (6), 437-64.

Rogers, A. and Prügel-Bennett, A. (2001) A Solvable Model Of A Hard Optimisation Problem: 1st. In, Kallel, L., Naudts, B. and Rogers, A. (eds.) Theoretical Aspects of Evolutionary Computing. Springer, pp. 207-221. (Natural Computing) ,

Prügel-Bennett, Adam (2000) Finite Population Effects for Ranking and Tournament Selection. Complex Systems, 12 (2), 183-205.

Prügel-Bennett, A (2001) The Mixing Rate of Different Crossover Operators. Martin, W. N. and Spears, W. (eds.) At Foundations of Genetic Algorithms 6 Foundations of Genetic Algorithms 6. pp. 261-274.

Prügel-Bennett, Adam (2001) Modelling Crossover-Induced Linkage in Genetic Algorithms. IEEE Transcations on Evolutionary Computation, 5 (4), 376-387.

Hertz, John and Prügel-Bennett, Adam (1996) Learning short synfire chains by self-organization. Network: Computatioon in Neural Systems, 7 (2), 357-363.

Hertz, John and Prügel-Bennett, Adam (1996) Learning synfire chains: Turning noise into signal. International Journal of Neural Systems, 7 (4), 445-451.

Shapiro, Jonathan L. and Prügel-Bennett, Adam (1997) Genetic algorithm dynamics in two-well potentials with basins and barrier. Belew, R. K. and Vose, M. D. (eds.) At Foundations of Genetic Algorithms - 4 Foundations of Genetic Algorithms - 4. pp. 101-116.

Foster, Jeff P., Prugel-Bennett, Adam and Nixon, Mark S. (2001) New Area Measures for Automatic Gait Recognition. At BMVA Workshop Understanding Visual Behaviour BMVA Workshop Understanding Visual Behaviour.

Foster, J.P., Nixon, M.S. and Prugel-Bennett, A. (2001) New Area Based Measures for Gait Recognition. Bigun, Josef and Smeraldi, Fabrizio (eds.) At Audio- and Video-Based Biometric Person Authentication Audio- and Video-Based Biometric Person Authentication. pp. 312-7.

Glass, Celia A. and Prügel-Bennett, Adam (2005) A Polynomially Searchable Exponential Neighbourhood for Graph Colouring. Journal of the Operational Research Society, 56 (3), 324-330.

Glass, Celia A. and Prügel-Bennett, Adam (2003) Genetic Algorithm for Graph Colouring: Exploration of Galinier and Hao's algorithm. Journal of Combinatorial Optimization, 7, 229-236.

Prügel-Bennett, A. (2001) Authored Appendix to Cumulant Dynamics of a Population under Multiplicative Selection, Mutation, and Drift by M. Rattray and J. L. Shapiro. Theoretical Population Biology, 60 (1), 28-32.

Jewell, Michael O, Nixon, Mark and Prugel-Bennett, Adam (2003) CBS: A Concept-Based Sequencer for Soundtrack Composition. Ng, Kia, Busch, Christoph and Nesi, Paolo (eds.) At 3rd International Conference on Web Delivering of Music 3rd International Conference on Web Delivering of Music. pp. 105-108.

Foster, Jeff, Nixon, Mark S and Prugel-Bennett, Adam (2002) Gait Recognition by Moment Based Descriptors. At 4th International Conference on Recent Advances in Soft Computing 4th International Conference on Recent Advances in Soft Computing, United Kingdom. pp. 78-84.

Foster, Jeff P., Nixon, Mark S. and Prugel-Bennett, Adam P. (2001) Recognising Movement and Gait by Masking Functions. Bigun, Josef (ed.) At Audio-Visual Biometric Person Authentication Audio-Visual Biometric Person Authentication, Sweden.

Foster, Jeff P., Nixon, Mark S. and Prudel-Bennett, Adam (2001) New Area Based Metrics for Automatic Gait Recognition. At British Machine Vision Conference British Machine Vision Conference. pp. 233-242.

Foster, Jeff P., Nixon, Mark S. and Prugel-Bennett, Adam (2003) Automatic gait recognition using area-based metrics. Pattern Recognition Letters, 24, 2489-2497.

Ng, YHP, Carmo, BS, Prugel-Bennett, A and Yang, GZ (2003) A First-Order Lagrangian-based variational approach for 3D flow vector field restoration. Lemke, HU, Vannier, MW, Inamura, K, Farman, AG, Doi, K and Reiber, JHC (eds.) At CARS 2003: COMPUTER ASSISTED RADIOLOGY AND SURGERY CARS 2003: COMPUTER ASSISTED RADIOLOGY AND SURGERY. 25 - 28 Jun 2003. pp. 1185-1190.

Prügel-Bennett, A. (2004) Symmetry Breaking in Population-Based Optimization. IEEE Transactions on Evolutionary Computation, 8 (1), 63-79.

Prügel-Bennett, A. (2004) When A Genetic Algorithm Outperforms Hill-Climbing. Theoretical Computer Science, 320 (1), 135-153.

Won, K.-J., Prugel-Bennett, A. and Krogh, A. (2004) Training HMM Structure with Genetic Algorithm for Biological Sequence Analysis. Bioinformatics, 20, 3613-3619.

He, M., Jennings, N. R. and Prugel-Bennett, A. (2004) An adaptive bidding agent for multiple English auctions: a neuro-fuzzy approach. At IEEE Conference on Fuzzy Systems IEEE Conference on Fuzzy Systems, Hungary. pp. 1519-1524.

Won, Kyoung-Jae, Prugel-Bennett, Adam and Krogh, Anders , Mircea Gh, Mircea Gh, Howlett, Robert J. and Jain, Lakhmi C. (eds.) (2004) The Block Hidden Markov Model for Biological Sequence Analysis. Lecture Notes in Computer Science, 3213, 64-70.

Jewell, Michael O., Middleton, Lee, Nixon, Mark S., Prügel-Bennett, Adam and Wong, Sylvia C. (2005) A Distributed Approach to Musical Composition. Khosla, Rajiv, Howlett, Robert J. and Jain, Lakhmi C. (eds.) At 9th International Conference on Knowledge-Based Intelligent Information and Engineering Systems (KES) 9th International Conference on Knowledge-Based Intelligent Information and Engineering Systems (KES), Australia. 14 - 16 Sep 2005. pp. 642-648.

Carmo, Bernardo Silva, Ng, Y H Pauline, Prügel-Bennett, Adam and Yang, Guang-Zhong , Barillot, C, Haynor, D R and Hellier, P (eds.) (2004) A Data Clustering and Streamline Reduction Method for 3D MR Flow Vector Field Simplification. Lecture Notes in Computer Science, 3216, 451-458.

Jewell, Michael O., Nixon, Mark S. and Prugel-Bennett, Adam (2005) State-Based Sequencing: Directing The Evolution of Music. At International Computer Music Conference International Computer Music Conference. 05 - 09 Sep 2005.

Jewell, Michael O., Lawrence, K. Faith, Tuffield, Mischa M., Prugel-Bennett, Adam, Millard, David E., Nixon, Mark S., schraefel, m.c. and Shadbolt, Nigel R. (2005) OntoMedia: An Ontology for the Representation of Heterogeneous Media. At Multimedia Information Retrieval Workshop (MMIR 2005) SIGIR Multimedia Information Retrieval Workshop (MMIR 2005) SIGIR, Brazil.

Lawrence, K. Faith, Tuffield, Mischa M., Jewell, Mike O., Prugel-Bennett, Adam, Millard, David E., Nixon, Mark S., schraefel, m. c. and Shadbolt, Nigel R. (2005) OntoMedia - Creating an Ontology for Marking Up the Contents of Heterogeneous Media. At Ontology Patterns for the Semantic Web ISWC-05 Workshop Ontology Patterns for the Semantic Web ISWC-05 Workshop.

Won, Kyoung Jae, Hamelryck, Thomas, Prugel-Bennett, Adam and Krogh, Anders (2005) Evolving Hidden Markov Models for Protein Secondary Structure Prediction. At IEEE Congress on Evolutionary Computation IEEE Congress on Evolutionary Computation. 02 - 05 Sep 2005. pp. 33-40.

Whiteford, Nava, Haslam, Niall, Weber, Gerald, Prügel-Bennett, Adam, Essex, Jonathan W., Roach, Peter L., Bradley, Mark and Neylon, Cameron (2005) An analysis of the feasibility of short read sequencing. Nucleic Acids Research, 33 (19), e171.

Zhou, Z., Prugel-Bennett, A. and Damper, R. I. (2006) A Bayesian framework for extracting human gait using strong prior knowledge. IEEE Transactions on Pattern Analysis and Machine Intelligence, 28 (11), 1738-1752.

Rogers, Alex, Prügel-Bennett, Adam and Jennings, N. R. (2006) Phase Transitions and Symmetry Breaking in Genetic Algorithms with Crossover. Theoretical Computer Science, 358 (1), 121-141.

Lawrence, K. Faith, Jewell, Michael O, schraefel, m. c. and Prugel-Bennett, Adam (2006) Annotation of Heterogenous Media Using OntoMedia. At First International Workshop on Semantic Web Annotations for Multimedia (SWAMM) First International Workshop on Semantic Web Annotations for Multimedia (SWAMM).

Zhou, Z, Damper, R I and Prugel-Bennett, A (2006) Model selection within a Bayesian approach to extraction of walker motion. At IEEE Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06) IEEE Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06). pp. 44-51.

Weber, Gerald, Haslam, Niall, Whiteford, Nava, Prügel-Bennett, Adam, Essex, Jonathan and Neylon, Cameron (2006) Thermal equivalence of DNA duplexes without calculation of melting temperature. Nature Physics, 2, 55-59.

Prügel-Bennett, A. and Rogers, A. (2001) Modelling GA Dynamics: 1st. In, Kallel, L., Naudts, B. and Rogers, A. (eds.) Theoretical Aspects of Evolutionary Computing. Springer, pp. 59-86. (Natural Computing) ,

Won, Kyoung-Jae, Prügel-Bennett, Adam and Krogh, Anders (2006) Evolving the Structure of Hidden Markov Models. IEEE Transactions on Evolutionary Computation, 10 (1), 39-49.

He, M, Jennings, N. R. and Prugel-Bennett, A (2006) A Heuristic Bidding Strategy for Buying Multiple Goods in Multiple English Auctions. ACM Transactions on Internet Technology, 6 (4), 465-496.

Pakka, Vijayanarasimha, Prugel-Bennett, Adam and Dasmahapatra, Srinandan (2009) Correlated fluctuations probe dynamics of transcriptional regulation. At Sixth International Workshop on Computational Systems Biology, WCSB 2009 Sixth International Workshop on Computational Systems Biology, WCSB 2009, Denmark. 10 - 12 Jun 2009.

Qasem, Mohamed and Prugel-Bennett, Adam (2010) Learning the large-scale structure of the max-sat landscape using populations. IEEE Transactions on Evolutionary Computation, 14 (4), 518-529. (doi:10.1109/TEVC.2009.2033579).

Qasem, Mohamed and Prugel-Bennett, Adam (2009) Improving Performance in Combinatorial Optimisation Using Averaging and Clustering. At EvoCOP'09 EvoCOP'09.

Qasem, Mohamed and Prugel-Bennett, Adam (2008) Complexity of Max-SAT using stochastic algorithms. At Proceedings of the 10th annual conference on Genetic and evolutionary computation Proceedings of the 10th annual conference on Genetic and evolutionary computation, Georgia.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) A Scalable, Accurate Hybrid Recommender System. The 3rd International Conference on Knowledge Discovery and Data Mining (WKDD 2010), Thailand. 09 - 10 Jan 2010.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) An improved switching hybrid recommender system using naive Bayes classifier and collaborative filtering. At The 2010 IAENG International Conference on Data Mining and Applications The 2010 IAENG International Conference on Data Mining and Applications. 17 - 19 Mar 2010.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) Novel Heuristics for Coalition Structure Generation in Multi-Agent Systems. At The 2010 International Conference of Computational Intelligence and Intelligent Systems The 2010 International Conference of Computational Intelligence and Intelligent Systems, United Kingdom. 30 Jun - 02 Jul 2010.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) Novel Significance Weighting Schemes for Collaborative Filtering: Generating Improved Recommendations in Sparse Environments. At DMIN'10, the 2010 International Conference on Data Mining! DMIN'10, the 2010 International Conference on Data Mining!, United States.

Prugel-Bennett, A. (2010) Benefits of a population: five mechanisms that advantage population-based algorithms. IEEE Transactions on Evolutionary Computation, 14 (4), 500-517.

Whiteford, N., Haslam, N., Weber, G., Prugel-Bennett, A., Essex, J.~W. and Neylon, C. (2008) Visualising the repeat structure of genomic sequences. Complex Systems, 17 (4), 381-398.

Pakka, Vijayanarasimha, Prugel-Bennett, Adam and Dasmahapatra, Srinandan (2010) Correlated fluctuations carry signatures of gene regulatory network dynamics. Journal of Theoretical Biology, 266 (3), 343-357. (PMID:20619272)

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) Building Switching Hybrid Recommender System Using Machine Learning Classifiers and Collaborative Filtering. IAENG International Journal of Computer Science, 37 (3).

Barnard, Thomas and Prügel-Bennett, Adam (2011) Experiments in Bayesian Recommendation. In Proceedings of the 7th Atlantic Web Intelligence Conference, AWIC 2011, Fribourg, Switzerland, January 26-28, 2011. Springer..

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2011) Fulfilling the needs of gray-sheep users in recommender systems, a clustering solution. At 2011 International Conference on Information Systems and Computational Intelligence 2011 International Conference on Information Systems and Computational Intelligence, China. 18 - 20 Jan 2011.

Barnard, Thomas and Prugel-Bennett, Adam (2011) Privacy-Preserving Profiling. At DMIN2011 DMIN2011, United States. 18 - 21 Jul 2011.

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2010) A Novel Magnetic Update Operator for Quantum Evolutionary Algorithms. At Advanced in Soft Computing, Springer-Verlag Berlin Heidelberg 2009 Advanced in Soft Computing, Springer-Verlag Berlin Heidelberg 2009.

Prugel-Bennett, A. and Tayarani-Najaran, M.-H. (2012) Maximum satisfiability: anatomy of the fitness landscape for a hard combinatorial optimisation problem. IEEE Transactions on Evolutionary Computation, 16 (3), 319-338.

Ghazanfar, Mustansar, Prugel-Bennett, Adam and Szedmak, Sandor (2012) Kernel mapping recommender system algorithms. Information Sciences, 208, 81-104.

Ghazanfar, Mustansar, Szedmak, Sandor and Prugel-Bennett, Adam (2011) Incremental Kernel Mapping Algorithms for Scalable Recommender Systems. At IEEE International Conference on Tools with Artificial Intelligence (ICTAI), Special Session on Recommender Systems in e-Commerce (RSEC) IEEE International Conference on Tools with Artificial Intelligence (ICTAI), Special Session on Recommender Systems in e-Commerce (RSEC), United States. 07 - 09 Nov 2011.

Syarif, Iwan, Prugel-Bennett, Adam and Wills, Gary B. (2012) Unsupervised clustering approach for network anomaly detection. At Fourth International Conference on Networked Digital Technologies (NDT 2012) Fourth International Conference on Networked Digital Technologies (NDT 2012), United Arab Emirates. 24 - 26 Apr 2012. 11 pp.

Syarif, Iwan, Zaluska, Ed, Prugel-Bennett, Adam and Wills, Gary (2012) Application of bagging, boosting and stacking to intrusion detection. At MLDM 2012: 8th International Conference on Machine Learning and Data Mining MLDM 2012: 8th International Conference on Machine Learning and Data Mining, Germany. 13 - 20 Jul 2012. 10 pp.

Syarif, Iwan, Prugel-Bennett, Adam and Wills, Gary (2012) Data mining approaches for network intrusion detection: from dimensionality reduction to misuse and anomaly detection. Journal of Information Technology Review, 3 (2), 70-83.

Bian, Wenming, French, M. and Prugel-Bennett, Adam (2013) Stability for network flow control against disturbances and time delays. SIAM Journal on Control and Optimization, 51 (2), 1063-1098.

Mehra, Chetan, Prugel-Bennett, Adam, Gerding, Enrico and Robu, Valentin (2014) Constructing smart portfolios from data driven quantitative investment models. At Computational Intelligence for Financial Engineering and Economics (CIFEr), London, GB, 27 - 28 Mar 2014. IEEE, 1-8. Computational Intelligence for Financial Engineering and Economics (CIFEr), London, GB, 27 - 28 Mar 2014. IEEE, 1-8.. pp. 1-8.

Nguyen, An, Prugel-Bennett, Adam and Dasmahapatra, Srinandan (2015) A low dimensional approximation for competence in Bacillus subtilis. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-12.

Zahra, Sobia, Ghazanfar, Mustansar Ali, Khalid, Asra, Azam, Muhammad Awais, Naeem, Usman and Prugel-Bennett, Adam (2015) Novel centroid selection approaches for KMeans-clustering based recommender systems. Information Sciences, 1-33. (doi:10.1016/j.ins.2015.03.062).

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2013) On the landscape of combinatorial optimization problems. IEEE Transactions on Evolutionary Computation, 18 (3), 420-434. (doi:10.1109/TEVC.2013.2281502).

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2015) Anatomy of the fitness landscape for dense graph-colouring problem. Journal of Swarm and Evolutionary Computation, 22, 47-65.

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2016) An analysis of the fitness landscape of travelling salesman problem. Evolutionary Computation, 24 (2), 347-384. (doi:10.1162/EVCO_a_00154).

Weaver, Iain S. and Prugel-Bennett, Adam (2015) Renormalisation of 2D cellular automata with an absorbing state. Journal of Statistical Physics, 159 (2), 211-220.

Squires, Steven, Prugel-Bennett, Adam and Niranjan, Mahesan (2017) Rank selection in non-negative matrix factorization using minimum description Length. Neural Computation, 29 (8), 2164-2176. (doi:10.1162/NECO_a_00980).

Squires, Steven, Edward, Montesdeoca Bermudez, Luis, Jairo, Prugel-Bennett, Adam and Niranjan, Mahesan (2017) Non-negative matrix factorization with exogenous inputs for modeling financial data. In Lecture Notes in Computer Science. Springer. 9 pp.

Squires, Steven, Edward, Ewing, Robert, Prugel-Bennett, Adam and Niranjan, Mahesan (2017) A method of integrating spatial proteomics and protein-protein interaction network data. In Lecture Notes in Computer Science. Springer. 9 pp. (doi:10.1007/978-3-319-70139-4_79).

Kramer, Iris, Caroline, Hare, Jonathon, Prugel-Bennett, Adam and Sargent, Isabel (2017) Automated detection of archaeology in the New Forest using deep learning with remote sensor data. At New Forest Knowledge Conference 2017 New Forest Knowledge Conference 2017: New Forest Historical Research and Archaeology: Who’s doing it?, Lyndhurst, United Kingdom. 27 - 28 Oct 2017.

Kramer, Iris, Caroline, Hare, Jonathon and Prugel-Bennett, Adam (2017) Automation on steroids: an exploration of why deep learning is dominating automation. At Aerial Archaeology Research Group 2017 Annual Meeting Aerial Archaeology Research Group 2017 Annual Meeting, Pula, Croatia. 13 - 15 Sep 2017.

Kramer, Iris, Caroline, Hare, Jonathon and Prugel-Bennett, Adam (2017) Tackling the small data problem in deep learning with multi-sensor approaches. At 46th Computer Applications and Quantitative Methods in Archaeology 46th Computer Applications and Quantitative Methods in Archaeology: Human History and Digital Future, Tübingen, Germany. 19 - 23 Mar 2018. (In Press)

Kramer, Iris, Caroline, Hare, Jonathon and Prugel-Bennett, Adam (2017) A future perspective for automated detection of archaeology using deep learning with remote sensor data. At ACM WomENcourage ACM WomENcourage: Celebration of Women in Computing, Barcelona, Spain. 06 - 08 Sep 2017.

Zhang, Yan, Hare, Jonathon and Prügel-Bennett, Adam (2018) Learning to count objects in natural images for visual question answering. International Conference on Learning Representations, Vancouver, Canada. 30 Apr - 03 May 2018. 17 pp.

Lim, Jin Wei, Prugel-Bennett, Adam and Thornton, Blair (2018) Automated interpretation of seafloor visual maps obtained using underwater robots. Oceans 2018 Kobe Japan, Kobe, Japan. 28 - 31 May 2018. 8 pp.

Lim, Jin Wei, Hopkinson, Peter, Harris, Michelle, Thornton, Blair, Prugel-Bennett, Adam and Teagle, Damon (2018) Automated analysis of borehole core imagery from Oman drilling project hole GT2A. Japan Geoscience Union Meeting, Chiba, Japan. 20 - 24 May 2018.

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