The University of Southampton
Telephone:
+442380594473
Email:
apb@ecs.soton.ac.uk

Professor Adam Prugel-Bennett 

Publications

Haslam, Niall J., Whiteford, Nava E., Weber, Gerald, Prügel-Bennett, Adam, Essex, Jonathan W. and Neylon, Cameron (2008) Optimal probe length varies for targets with high sequence variation: implications for probe library design for resequencing highly variable genes. PLoS ONE, 3 (6), e2500. (doi:10.1371/journal.pone.0002500).

Rogers, A. and Prügel-Bennett, A. (1999) Modelling the Dynamics of a Steady State Genetic Algorithm. In, Banzhaf, W. and Reeves, C. (eds.) Foundations of Genetic Algorithms 5. Foundations of Genetic Algorithms - 5 (01/09/99) Springer, pp. 57-68.

Prügel-Bennett, A (1999) On the Long String Limit. Banzhaf, W. and Reeves, C. (eds.) Foundations of Genetic Algorithms 5. pp. 45-56 .

Rogers, A. and Prügel-Bennett, A. (2000) Evolving Populations with Overlapping Generations. Theoretical Population Biology, 57 (2), 121-29.

Rogers, A. and Prügel-Bennett, A. (1999) Genetic Drift in Genetic Algorithm Selection Schemes. IEEE Transactions on Evolutionary Computation, 3 (4), 298-303.

Prügel-Bennett, A. and Shapiro, J. L. (1997) An analysis of genetic algorithms using statistical mechanics. Physica D: Nonlinear Phenomena, 104, 75-114.

Prügel-Bennett, A. (1997) Modelling Evolving Populations. Journal of Theoretical Biology, 185, 81-95.

Rogers, A. and Prügel-Bennett, A. (2000) The Dynamics of a Genetic Algorithm on a Model Hard Optimization Problem. Complex Systems, 11 (6), 437-64.

Rogers, A. and Prügel-Bennett, A. (2001) A Solvable Model Of A Hard Optimisation Problem: 1st. In, Kallel, L., Naudts, B. and Rogers, A. (eds.) Theoretical Aspects of Evolutionary Computing. (Natural Computing) Theoretical Aspects of Evolutionary Computing (01/01/01) Springer, pp. 207-221.

Prügel-Bennett, Adam (2000) Finite Population Effects for Ranking and Tournament Selection. Complex Systems, 12 (2), 183-205.

Prügel-Bennett, A (2001) The Mixing Rate of Different Crossover Operators. Martin, W. N. and Spears, W. (eds.) Foundations of Genetic Algorithms 6. pp. 261-274 .

Prügel-Bennett, Adam (2001) Modelling Crossover-Induced Linkage in Genetic Algorithms. IEEE Transcations on Evolutionary Computation, 5 (4), 376-387.

Hertz, John and Prügel-Bennett, Adam (1996) Learning short synfire chains by self-organization. Network: Computatioon in Neural Systems, 7 (2), 357-363.

Hertz, John and Prügel-Bennett, Adam (1996) Learning synfire chains: Turning noise into signal. International Journal of Neural Systems, 7 (4), 445-451.

Shapiro, Jonathan L. and Prügel-Bennett, Adam (1997) Genetic algorithm dynamics in two-well potentials with basins and barrier. Belew, R. K. and Vose, M. D. (eds.) Foundations of Genetic Algorithms - 4. pp. 101-116 .

Foster, Jeff P., Prugel-Bennett, Adam and Nixon, Mark S. (2001) New Area Measures for Automatic Gait Recognition. BMVA Workshop Understanding Visual Behaviour.

Foster, J.P., Nixon, M.S. and Prugel-Bennett, A. (2001) New Area Based Measures for Gait Recognition. Bigun, Josef and Smeraldi, Fabrizio (eds.) Audio- and Video-Based Biometric Person Authentication. pp. 312-7 .

Glass, Celia A. and Prügel-Bennett, Adam (2005) A Polynomially Searchable Exponential Neighbourhood for Graph Colouring. Journal of the Operational Research Society, 56 (3), 324-330.

Glass, Celia A. and Prügel-Bennett, Adam (2003) Genetic Algorithm for Graph Colouring: Exploration of Galinier and Hao's algorithm. Journal of Combinatorial Optimization, 7, 229-236.

Prügel-Bennett, A. (2001) Authored Appendix to Cumulant Dynamics of a Population under Multiplicative Selection, Mutation, and Drift by M. Rattray and J. L. Shapiro. Theoretical Population Biology, 60 (1), 28-32.

Jewell, Michael O, Nixon, Mark and Prugel-Bennett, Adam (2003) CBS: A Concept-Based Sequencer for Soundtrack Composition. Ng, Kia, Busch, Christoph and Nesi, Paolo (eds.) 3rd International Conference on Web Delivering of Music. pp. 105-108 .

Foster, Jeff, Nixon, Mark S and Prugel-Bennett, Adam (2002) Gait Recognition by Moment Based Descriptors. 4th International Conference on Recent Advances in Soft Computing, United Kingdom. pp. 78-84 .

Foster, Jeff P., Nixon, Mark S. and Prugel-Bennett, Adam P. (2001) Recognising Movement and Gait by Masking Functions. Bigun, Josef (ed.) Audio-Visual Biometric Person Authentication, Sweden.

Foster, Jeff P., Nixon, Mark S. and Prudel-Bennett, Adam (2001) New Area Based Metrics for Automatic Gait Recognition. British Machine Vision Conference. pp. 233-242 .

Foster, Jeff P., Nixon, Mark S. and Prugel-Bennett, Adam (2003) Automatic gait recognition using area-based metrics. Pattern Recognition Letters, 24, 2489-2497.

Ng, YHP, Carmo, BS, Prugel-Bennett, A and Yang, GZ (2003) A First-Order Lagrangian-based variational approach for 3D flow vector field restoration. Lemke, HU, Vannier, MW, Inamura, K, Farman, AG, Doi, K and Reiber, JHC (eds.) CARS 2003: COMPUTER ASSISTED RADIOLOGY AND SURGERY. 25 - 28 Jun 2003. pp. 1185-1190 .

Prügel-Bennett, A. (2004) Symmetry Breaking in Population-Based Optimization. IEEE Transactions on Evolutionary Computation, 8 (1), 63-79.

Prügel-Bennett, A. (2004) When A Genetic Algorithm Outperforms Hill-Climbing. Theoretical Computer Science, 320 (1), 135-153.

Won, K.-J., Prugel-Bennett, A. and Krogh, A. (2004) Training HMM Structure with Genetic Algorithm for Biological Sequence Analysis. Bioinformatics, 20, 3613-3619.

He, M., Jennings, N. R. and Prugel-Bennett, A. (2004) An adaptive bidding agent for multiple English auctions: a neuro-fuzzy approach. IEEE Conference on Fuzzy Systems, Hungary. pp. 1519-1524 .

Won, Kyoung-Jae, Prugel-Bennett, Adam and Krogh, Anders , Mircea Gh, Mircea Gh, Howlett, Robert J. and Jain, Lakhmi C. (eds.) (2004) The Block Hidden Markov Model for Biological Sequence Analysis. Lecture Notes in Computer Science, 3213, 64-70.

Jewell, Michael O., Middleton, Lee, Nixon, Mark S., Prügel-Bennett, Adam and Wong, Sylvia C. (2005) A Distributed Approach to Musical Composition. Khosla, Rajiv, Howlett, Robert J. and Jain, Lakhmi C. (eds.) 9th International Conference on Knowledge-Based Intelligent Information and Engineering Systems (KES), Australia. 14 - 16 Sep 2005. pp. 642-648 .

Carmo, Bernardo Silva, Ng, Y H Pauline, Prügel-Bennett, Adam and Yang, Guang-Zhong , Barillot, C, Haynor, D R and Hellier, P (eds.) (2004) A Data Clustering and Streamline Reduction Method for 3D MR Flow Vector Field Simplification. Lecture Notes in Computer Science, 3216, 451-458.

Jewell, Michael O., Nixon, Mark S. and Prugel-Bennett, Adam (2005) State-Based Sequencing: Directing The Evolution of Music. International Computer Music Conference. 05 - 09 Sep 2005.

Lawrence, K. Faith, Tuffield, Mischa M., Jewell, Mike O., Prugel-Bennett, Adam, Millard, David E., Nixon, Mark S., schraefel, m. c. and Shadbolt, Nigel R. (2005) OntoMedia - Creating an Ontology for Marking Up the Contents of Heterogeneous Media. Ontology Patterns for the Semantic Web ISWC-05 Workshop.

Won, Kyoung Jae, Hamelryck, Thomas, Prugel-Bennett, Adam and Krogh, Anders (2005) Evolving Hidden Markov Models for Protein Secondary Structure Prediction. IEEE Congress on Evolutionary Computation. 02 - 05 Sep 2005. pp. 33-40 .

Whiteford, Nava, Haslam, Niall, Weber, Gerald, Prugel-Bennett, Adam, Essex, Jonathan W., Roach, Peter L., Bradley, Mark and Neylon, Cameron (2005) An analysis of the feasibility of short read sequencing. Nucleic Acids Research, 33 (19), e171. (doi:10.1093/nar/gni170).

Zhou, Z., Prugel-Bennett, A. and Damper, R. I. (2006) A Bayesian framework for extracting human gait using strong prior knowledge. IEEE Transactions on Pattern Analysis and Machine Intelligence, 28 (11), 1738-1752.

Rogers, Alex, Prügel-Bennett, Adam and Jennings, N. R. (2006) Phase Transitions and Symmetry Breaking in Genetic Algorithms with Crossover. Theoretical Computer Science, 358 (1), 121-141.

Lawrence, K. Faith, Jewell, Michael O, schraefel, m. c. and Prugel-Bennett, Adam (2006) Annotation of Heterogenous Media Using OntoMedia. First International Workshop on Semantic Web Annotations for Multimedia (SWAMM).

Zhou, Z, Damper, R I and Prugel-Bennett, A (2006) Model selection within a Bayesian approach to extraction of walker motion. IEEE Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06). pp. 44-51 .

Weber, Gerald, Haslam, Niall, Whiteford, Nava, Prügel-Bennett, Adam, Essex, Jonathan and Neylon, Cameron (2006) Thermal equivalence of DNA duplexes without calculation of melting temperature. Nature Physics, 2 (1), 55-59. (doi:10.1038/nphys189).

Prügel-Bennett, A. and Rogers, A. (2001) Modelling GA Dynamics: 1st. In, Kallel, L., Naudts, B. and Rogers, A. (eds.) Theoretical Aspects of Evolutionary Computing. (Natural Computing) Springer, pp. 59-86.

Won, Kyoung-Jae, Prügel-Bennett, Adam and Krogh, Anders (2006) Evolving the Structure of Hidden Markov Models. IEEE Transactions on Evolutionary Computation, 10 (1), 39-49.

He, M, Jennings, N. R. and Prugel-Bennett, A (2006) A Heuristic Bidding Strategy for Buying Multiple Goods in Multiple English Auctions. ACM Transactions on Internet Technology, 6 (4), 465-496.

Pakka, Vijayanarasimha, Prugel-Bennett, Adam and Dasmahapatra, Srinandan (2009) Correlated fluctuations probe dynamics of transcriptional regulation. Sixth International Workshop on Computational Systems Biology, WCSB 2009, Denmark. 10 - 12 Jun 2009.

Qasem, Mohamed and Prugel-Bennett, Adam (2010) Learning the large-scale structure of the max-sat landscape using populations. IEEE Transactions on Evolutionary Computation, 14 (4), 518-529. (doi:10.1109/TEVC.2009.2033579).

Qasem, Mohamed and Prugel-Bennett, Adam (2009) Improving Performance in Combinatorial Optimisation Using Averaging and Clustering. EvoCOP'09.

Qasem, Mohamed and Prugel-Bennett, Adam (2008) Complexity of Max-SAT using stochastic algorithms. Proceedings of the 10th annual conference on Genetic and evolutionary computation, Georgia.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) A Scalable, Accurate Hybrid Recommender System. The 3rd International Conference on Knowledge Discovery and Data Mining (WKDD 2010), Thailand. 09 - 10 Jan 2010.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) An improved switching hybrid recommender system using naive Bayes classifier and collaborative filtering. The 2010 IAENG International Conference on Data Mining and Applications. 17 - 19 Mar 2010.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) Novel Heuristics for Coalition Structure Generation in Multi-Agent Systems. The 2010 International Conference of Computational Intelligence and Intelligent Systems, United Kingdom. 30 Jun - 02 Jul 2010.

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) Novel Significance Weighting Schemes for Collaborative Filtering: Generating Improved Recommendations in Sparse Environments. DMIN'10, the 2010 International Conference on Data Mining!, United States.

Prugel-Bennett, A. (2010) Benefits of a population: five mechanisms that advantage population-based algorithms. IEEE Transactions on Evolutionary Computation, 14 (4), 500-517. (doi:10.1109/TEVC.2009.2039139).

Whiteford, N., Haslam, N., Weber, G., Prugel-Bennett, A., Essex, J.~W. and Neylon, C. (2008) Visualising the repeat structure of genomic sequences. Complex Systems, 17 (4), 381-398.

Pakka, Vijayanarasimha, Prugel-Bennett, Adam and Dasmahapatra, Srinandan (2010) Correlated fluctuations carry signatures of gene regulatory network dynamics. Journal of Theoretical Biology, 266 (3), 343-357. (doi:10.1016/j.jtbi.2010.06.039). (PMID:20619272)

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2010) Building Switching Hybrid Recommender System Using Machine Learning Classifiers and Collaborative Filtering. IAENG International Journal of Computer Science, 37 (3).

Barnard, Thomas and Prügel-Bennett, Adam (2011) Experiments in Bayesian Recommendation. In Proceedings of the 7th Atlantic Web Intelligence Conference, AWIC 2011, Fribourg, Switzerland, January 26-28, 2011. Springer..

Ghazanfar, Mustansar and Prugel-Bennett, Adam (2011) Fulfilling the needs of gray-sheep users in recommender systems, a clustering solution. 2011 International Conference on Information Systems and Computational Intelligence, China. 18 - 20 Jan 2011.

Barnard, Thomas and Prugel-Bennett, Adam (2011) Privacy-Preserving Profiling. DMIN2011, United States. 18 - 21 Jul 2011.

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2010) A Novel Magnetic Update Operator for Quantum Evolutionary Algorithms. Advanced in Soft Computing, Springer-Verlag Berlin Heidelberg 2009.

Prugel-Bennett, A. and Tayarani-Najaran, M.-H. (2012) Maximum satisfiability: anatomy of the fitness landscape for a hard combinatorial optimisation problem. IEEE Transactions on Evolutionary Computation, 16 (3), 319-338. (doi:10.1109/TEVC.2011.2163638).

Ghazanfar, Mustansar, Prugel-Bennett, Adam and Szedmak, Sandor (2012) Kernel mapping recommender system algorithms. Information Sciences, 208, 81-104. (doi:10.1016/j.ins.2012.04.012).

Ghazanfar, Mustansar, Szedmak, Sandor and Prugel-Bennett, Adam (2011) Incremental Kernel Mapping Algorithms for Scalable Recommender Systems. IEEE International Conference on Tools with Artificial Intelligence (ICTAI), Special Session on Recommender Systems in e-Commerce (RSEC), United States. 07 - 09 Nov 2011.

Syarif, Iwan, Prugel-Bennett, Adam and Wills, Gary B. (2012) Unsupervised clustering approach for network anomaly detection. Fourth International Conference on Networked Digital Technologies (NDT 2012), United Arab Emirates. 24 - 26 Apr 2012. 11 pp .

Syarif, Iwan, Zaluska, Ed, Prugel-Bennett, Adam and Wills, Gary (2012) Application of bagging, boosting and stacking to intrusion detection. MLDM 2012: 8th International Conference on Machine Learning and Data Mining, Germany. 13 - 20 Jul 2012. 10 pp .

Syarif, Iwan, Prugel-Bennett, Adam and Wills, Gary (2012) Data mining approaches for network intrusion detection: from dimensionality reduction to misuse and anomaly detection. Journal of Information Technology Review, 3 (2), 70-83.

Bian, Wenming, French, M. and Prugel-Bennett, Adam (2013) Stability for network flow control against disturbances and time delays. SIAM Journal on Control and Optimization, 51 (2), 1063-1098. (doi:10.1137/090750135).

Mehra, Chetan, Prugel-Bennett, Adam, Gerding, Enrico and Robu, Valentin (2014) Constructing smart portfolios from data driven quantitative investment models. Computational Intelligence for Financial Engineering and Economics (CIFEr), London, GB, 27 - 28 Mar 2014. IEEE, 1-8.. pp. 1-8 .

Nguyen, An, Prugel-Bennett, Adam and Dasmahapatra, Srinandan (2016) A low dimensional approximation for competence in Bacillus subtilis. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 13 (2), 272-280. (doi:10.1109/TCBB.2015.2440275).

Zahra, Sobia, Ghazanfar, Mustansar Ali, Khalid, Asra, Azam, Muhammad Awais, Naeem, Usman and Prugel-Bennett, Adam (2015) Novel centroid selection approaches for KMeans-clustering based recommender systems. Information Sciences, 1-33. (doi:10.1016/j.ins.2015.03.062).

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2013) On the landscape of combinatorial optimization problems. IEEE Transactions on Evolutionary Computation, 18 (3), 420-434. (doi:10.1109/TEVC.2013.2281502).

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2015) Anatomy of the fitness landscape for dense graph-colouring problem. Swarm and Evolutionary Computation, 22, 47-65. (doi:10.1016/j.swevo.2015.01.005).

Tayarani Najaran, Mohammad and Prugel-Bennett, Adam (2016) An analysis of the fitness landscape of travelling salesman problem. Evolutionary Computation, 24 (2), 347-384. (doi:10.1162/EVCO_a_00154).

Weaver, Iain S. and Prugel-Bennett, Adam (2015) Renormalisation of 2D cellular automata with an absorbing state. Journal of Statistical Physics, 159 (2), 211-220. (doi:10.1007/s10955-014-1142-4).

Squires, Steven, Prugel-Bennett, Adam and Niranjan, Mahesan (2017) Rank selection in non-negative matrix factorization using minimum description Length. Neural Computation, 29 (8), 2164-2176. (doi:10.1162/NECO_a_00980).

Squires, Steven, Edward, Montesdeoca Bermudez, Luis, Jairo, Prugel-Bennett, Adam and Niranjan, Mahesan (2017) Non-negative matrix factorization with exogenous inputs for modeling financial data. In Lecture Notes in Computer Science. vol. 10635, Springer. pp. 873-881 . (doi:10.1007/978-3-319-70096-0_89).

Squires, Steven, Edward, Ewing, Robert, Prugel-Bennett, Adam and Niranjan, Mahesan (2017) A method of integrating spatial proteomics and protein-protein interaction network data. In Lecture Notes in Computer Science. Springer. 9 pp . (doi:10.1007/978-3-319-70139-4_79).

Kramer, Iris, Caroline, Hare, Jonathon, Prugel-Bennett, Adam and Sargent, Isabel (2017) Automated detection of archaeology in the New Forest using deep learning with remote sensor data. New Forest Knowledge Conference 2017: New Forest Historical Research and Archaeology: Who’s doing it?, Lyndhurst, United Kingdom. 27 - 28 Oct 2017.

Kramer, Iris, Caroline, Hare, Jonathon and Prugel-Bennett, Adam (2017) Automation on steroids: an exploration of why deep learning is dominating automation. Aerial Archaeology Research Group 2017 Annual Meeting, Pula, Croatia. 13 - 15 Sep 2017.

Kramer, Iris, Caroline, Hare, Jonathon and Prugel-Bennett, Adam (2017) Tackling the small data problem in deep learning with multi-sensor approaches. 46th Computer Applications and Quantitative Methods in Archaeology: Human History and Digital Future, Tübingen, Germany. 19 - 23 Mar 2018. (In Press)

Kramer, Iris, Caroline, Hare, Jonathon and Prugel-Bennett, Adam (2017) A future perspective for automated detection of archaeology using deep learning with remote sensor data. ACM WomENcourage: Celebration of Women in Computing, Barcelona, Spain. 06 - 08 Sep 2017.

Zhang, Yan, Hare, Jonathon and Prügel-Bennett, Adam (2018) Learning to count objects in natural images for visual question answering. International Conference on Learning Representations, Vancouver, Canada. 30 Apr - 03 May 2018. 17 pp .

Lim, Jin Wei, Prugel-Bennett, Adam and Thornton, Blair (2018) Automated interpretation of seafloor visual maps obtained using underwater robots. 2018 OCEANS - MTS/IEEE Kobe Techno-Oceans (OTO), Kobe, Japan. 28 - 31 May 2018. 8 pp . (doi:10.1109/OCEANSKOBE.2018.8559247).

Lim, Jin Wei, Hopkinson, Peter, Harris, Michelle, Thornton, Blair, Prugel-Bennett, Adam and Teagle, Damon (2018) Automated analysis of borehole core imagery from Oman drilling project hole GT2A. Japan Geoscience Union Meeting, Chiba, Japan. 20 - 24 May 2018.

Walker, Jennifer, Thornton, Blair, Prugel-Bennett, Adam, Huvenne, Veerle and Ruhl, Henry (2018) Learning in the deep: combining machine learning and automated deep-sea photography. Nvidia GTC Europe, Munich, Germany.

Zhang, Yan, Hare, Jonathon and Prugel-Bennett, Adam (2019) Learning representations of sets through optimized permutations. International Conference on Learning Representations, New Orleans, United States. 06 - 09 May 2019. 26 pp .

Walker, Jennifer, Prugel-Bennett, Adam, Thornton, Blair and Yamada, Takaki (2019) The effect of physics-based corrections and data augmentation on transfer learning for segmentation of benthic imagery. In 2019 IEEE Underwater Technology (UT). IEEE. 8 pp . (doi:10.1109/UT.2019.8734463).

Romero Moreno, Guillermo, Niranjan, Mahesan and Prugel-Bennett, Adam (2019) Saliency map on Cnns for protein secondary structure prediction. In ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP). IEEE. pp. 1249-1253 . (doi:10.1109/ICASSP.2019.8683603).

Zhang, Yan, Hare, Jonathon and Prugel-Bennett, Adam (2019) Deep set prediction networks. Sets & Partitions: NeurIPS 2019 Workshop, Vancouver, Canada. 14 Dec 2019.

Zhang, Yan, Hare, Jonathon and Prugel-Bennett, Adam (2019) FSPool: Learning set representations with featurewise sort pooling. Sets & Partitions: NeurIPS 2019 Workshop, Vancouver, Canada. 14 Dec 2019.

Zhang, Yan, Hare, Jonathon and Prugel-Bennett, Adam (2019) Deep set prediction networks. 2019 Conference on Neural Information Processing Systems, Vancouver, Canada. 08 - 14 May 2019.

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