The University of Southampton
Telephone:
+442380598866
Email:
dkb@it-innovation.soton.ac.uk

Dr Dan Burns 

Dan is a Research Engineer at the IT Innovation Centre within the School of Electronics and Computer Science, University of Southampton. After a PhD in Theoretical Particle Physics from the University of Manchester completed in 2015, with a short post-doc in Particle Cosmology in 2016, he joined the IT Innovation Centre in 2017.

He has an intimate familiarity with the data science pipeline: from the extraction of meaningful data and pre-processing, to the critical evaluation of results from machine learning algorithm studies and the deployment of machine-learned models. He is primarily driven by the vast application domain of statistics, particularly where cross-disciplinary work is involved, and has extensive experience in statistical analysis and the development of Monte-Carlo simulations.

In the COVID-19 era, Dan has undertaken several projects to assist with the UK's national epidemic response:

  • Prediction of COVID-19 hospital impact using infectious disease epidemic modelling: fitting stochastic epidemic models to time series of hospitalisations to infer hospital impact
  • The statistical evaluation of new and emerging testing technologies to identify SARS-CoV-2 such as lateral flow devices and loop mediated isothermal amplification (LAMP) based technologies
  • Development of models of regular testing, taking into account the epidemiology and virology of SARS-CoV-2, sociological factors of adherence to testing and isolation, operational and logistical characteristics of the programme, and then determining how a given isolation policy subsequently affects transmission
  • Development of machine learning models to predict COVID-19 patient deterioration

In addition to COVID-19 work, Dan has worked on various projects. Historically, his work has been on the following research projects:

CrowdHEALTH (EU H2020 project): CrowdHEALTH intends to integrate high volumes of health-related heterogeneous data from multiple sources and develop data analytics tools to operate on the integrated data, with the aim of supporting policy making decisions. Dan’s work in this project is in the development of machine learning prediction algorithms to predict when patients will have the first diagnosis of a set of high-impact diseases, such as cardiovascular disease and chronic kidney disease, in a timely and accurate fashion such that one can construct possible preparation and prevention approaches. The project utilises the prediction algorithm for population risk stratification.

BigMedilytics (EU H2020 project): BigMedilytics aims to transform the EU healthcare sector by using state-of-the-art big data technologies to achieve breakthrough productivity in the sector by reducing cost, improving patient outcomes and delivering better access to healthcare facilities simultaneously. Dan’s work in this project revolves around studying self-reported patient data associated with chronic obstructive pulmonary disease, linked with weather and pollution data in the patient’s home environment, to predict COPD exacerbation events. He is currently working on a machine learning algorithm to predict when these events will occur based on the linked data, so that patients can either prepare for the event by obtaining medication, or by preventing the event altogether.

Dan has also completed several pieces of commercially funded work as part of the VIVACE accelerated capability environment, as well as direct projects from the UK Home Office.

Research

Research interests

Dan’s research interests spans multiple fields in computer science and statistics.

In statistics, his core interests are the following:

  • Development of more effective sampling techniques for producing samples from multivariate distributions
  • Development of metrics for the assessment of statistical conditional models/machine learning models as applied to data
  • The synthesis of Monte-Carlo simulation with machine learning and statistical learning

In data science, his core interests are in the following:

Missing data approaches: the vast majority of real-world applications of machine learning methods involve the problem of missing data. Imputation is one the most common approaches to handling missing data, and is practically useful. However, for accurate imputation, one needs a lot of data, as the imputation problem is often a more difficult problem to solve than the machine learning task at hand. Dan has great interest in developing approaches to missing data that do not involve imputation and exploits the full data in other manners, either through the modification of existing machine learning algorithms, or by the creation of new ones.

Electronic Patient Record event prediction: having an advanced knowledge of certain unfavourable medical events occurring, such as the first diagnosis of a high-impact disease or medical events that can repeat such as myocardial infarction, for individual patients can be used to either prepare for the event’s occurrence, or prevent it altogether. Dan is interested in developing approaches to predict these events, using either statistical analysis or machine learning methodologies, and developing models of disease progression. He is primarily interested in approaches that are generic, i.e., using electronic patient record datasets to determine the most significant factors affecting the events of interest rather than explicit domain expertise.

Other interests within data science includes:

  • Development of new classification techniques for the exploration of scientific data
  • Time series, image, audio/speech specific feature extraction and classification approaches

Dan holds other research interests outside of data science and statistics, including cryptography and efficient fully homomorphic encryption schemes for secure cloud computation.

Publications

Grace, Paul, Burns, Daniel, Neumann, Geoffrey, Pickering, Brian, Melas, Panagiotis and Surridge, Michael (2018) Identifying privacy risks in distributed data services: A model-driven approach. In 2018 IEEE 38th International Conference on Distributed Computing Systems (ICDCS). IEEE. 1513 - 1518 . (doi:10.1109/ICDCS.2018.00157).

Neumann, Geoffrey, Grace, Paul, Burns, Daniel and Surridge, Michael (2019) Pseudonymization risk analysis in distributed systems. Journal of Internet Services and Applications, 10 (1). (doi:10.1186/s13174-018-0098-z).

Burns, Daniel, Karamitsos, Sotirios and Pilaftsis, Apostolos (2016) Frame-covariant formulation of inflation in Scalar-Curvature theories. Nuclear Physics B, 907, 785-819. (doi:10.1016/j.nuclphysb.2016.04.036).

Burns, Daniel and Pilaftsis, Apostolos (2015) Matter quantum corrections to the graviton self-energy and the Newtonian potential. Physical Review D, 91 (6), [064047]. (doi:10.1103/PhysRevD.91.064047).

Chmiel, Francis, Burns, Daniel, Pickering, Brian, Blythin, Alison, Wilkinson, Thomas and Boniface, Michael (2020) Retrospective development and evaluation of prognostic models for exacerbation event prediction in patients with Chronic Obstructive Pulmonary Disease using data self-reported to a digital health application. The Lancet Digital Health. (doi:10.1101/2020.11.30.20237727). (Submitted)

Chmiel, F. P., Azor, M., Borca, F., Boniface, M. J., Burns, D. K., Zlatev, Z. D., White, N. M., Daniels, T. W.V. and Kiuber, M. (2020) Identifying those at risk of reattendance at discharge from emergency departments using explainable machine learning. medRxiv. (doi:10.1101/2020.12.02.20239194).

Ptasinska, Anetta, Whalley, Celina M., Bosworth, Andrew, Poxon, Charlotte, Bryer, Claire, Machin, Nicholas, Grippon, Seden, Wise, Emma L, Armson, Bryony, Howson, Emma L. A., Goring, Alice, Snell, Gemma, Forster, Jade, Mattocks, Christopher, Frampton, Sarah May, Anderson, Rebecca, Cleary, David, Parker, Joe, Boukas, Konstantinos, Graham, Nichola, Cellura, Doriana, Garratt, Emma, Skilton, Rachel, Sheldon, Hana, Collins, Alla, Ahmad-Saeed, Nusreen, Friar, Simon, Burns, Daniel, Williams, Tim, Godfrey, Keith, Deans, Zandra, Douglas, Angela, Hill, Sue, Kidd, Michael, Porter, Deborah, Kidd, Stephen P., Cortes, Nicholas J, Fowler, Veronica L., Williams, Tony, Richter, Alex G. and Beggs, Andrew D. (2021) Diagnostic accuracy of Loop mediated isothermal amplification coupled to Nanopore sequencing (LamPORE) for the detection of SARS-CoV-2 infection at scale in symptomatic and asymptomatic populations. Clinical Microbiology and Infection. (In Press)

Duckworth, Christopher, Chmiel, Francis P., Burns, Daniel, Zlatev, Zlatko D., White, Neil M., Daniels, Thomas W. V., Kiuber, Michael and Boniface, Michael J. (2021) Emergency department admissions during COVID-19: explainable machine learning to characterise data drift and detect emergent health risks. medRxiv. (doi:10.1101/2021.05.27.21257713).

Boniface, Michael, Burns, Daniel, Duckworth, Chris, Duruiheoma, Franklin, Armitage, Htwe, Ratcliffe, Naomi, Duffy, John, O’Keeffe, Caroline and Inada-Kim, Matt (2021) COVID Oximetry @home: evaluation of patient outcomes. medRxiv. (doi:10.1101/2021.05.29.21257899).

Kidd, Stephen, Burns, Daniel, Armson, Bryony, Beggs, Andrew D., Howson, Emma L. A., Williams, Anthony, Snell, Gemma, Wise, Emma L., Goring, Alice, Vincent-Mistiaen, Zoé, Grippon, Seden, Sawyer, Jason, Cassar, Claire, Cross, David, Lewis, Tom, Reid, Scott, Rivers, Samantha, James, Joe, Skinner, Paul, Banyard, Ashley, Davies, Kerrie, Ptasinska, Anetta, Whalley, Celina M., Poxon, Charlie, Bosworth, Andrew, Kidd, I. Michael, Richter, Alex G., Burton, Jane, Love, Hannah, Fouch, Sarah, Tillyer, Claire, Sowood, Amy, Patrick, Helen, Moore, Nathan, Andreou, Michael, Laxman, Shailen, Morant, Nick, Clark, Duncan, Walsh, Charlotte, Houghton, Rebecca, Parker, Joel D, Slater-Jefferies, Joanne, Brown, Ian, Deans, Zandra, Porter, Deborah, Cortes, Nicholas J., Godfrey, Keith, Douglas, Angela, Hill, Sue and Fowler, Veronica L. (2021) RT-LAMP has high accuracy for detecting SARS-CoV-2 in saliva and naso/oropharyngeal swabs from asymptomatic and symptomatic individuals. (doi:10.1101/2021.06.28.21259398).

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